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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
BLCA rs13270385 chr8:105164753 T/C HSD3B1 chr1:120049821-120057677:+ 0.31 6.22 1.33E-9 Box Plot
BLCA rs13279660 chr8:18394992 A/G INTS9 chr8:28625178-28747759:- -0.54 -6.04 3.69E-9 Box Plot
BLCA rs13290598 chr9:2624433 A/G TM7SF2 chr11:64879317-64883856:+ 0.26 5.97 5.48E-9 Box Plot
BLCA rs13296 chr6:44218120 A/G HSP90AB2P chr4:13335038-13340281:+ 0.84 16.58 6.26E-47 Box Plot
BLCA rs1329723 chr9:18345987 A/C PSIP1 chr9:15464064-15511017:- -0.4 -6.76 5.06E-11 Box Plot
BLCA rs1329723 chr9:18345987 A/C SNAPC3 chr9:15422702-15465951:+ -0.44 -6.06 3.23E-9 Box Plot
BLCA rs13330279 chr16:77235574 A/G KRTAP19-3 chr21:31863782-31864303:- 0.29 6.36 5.68E-10 Box Plot
BLCA rs13339461 chr16:26361719 A/G C14orf138 chr14:50575350-50583297:- -0.4 -6.04 3.75E-9 Box Plot
BLCA rs13341894 chr17:15422432 A/G COPS3 chr17:17150134-17184607:- 0.66 6.05 3.51E-9 Box Plot
BLCA rs13341894 chr17:15422432 A/G KIAA0753 chr17:6481468-6544247:- 0.75 6.27 9.61E-10 Box Plot
BLCA rs13341894 chr17:15422432 A/G MAP2K4 chr17:11924141-12047147:+ 0.86 6.41 4.35E-10 Box Plot
BLCA rs13341894 chr17:15422432 A/G RNASEK chr17:6915736-6917851:+ 0.68 6.7 7.47E-11 Box Plot
BLCA rs13341894 chr17:15422432 A/G WRAP53 chr17:7589389-7606820:+ 0.67 6.27 9.55E-10 Box Plot
BLCA rs13374999 chr1:181074884 T/C L1CAM chrX:153126969-153174677:- 0.42 5.95 5.89E-9 Box Plot
BLCA rs13375130 chr1:165924620 G/C DPYSL2 chr8:26371538-26515694:+ 0.35 6.01 4.31E-9 Box Plot